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    Home » Breakfast Recipes » Egg Cheese and Sausage Muffins (High-Protein, Low-Carb Breakfast)

    Egg Cheese and Sausage Muffins (High-Protein, Low-Carb Breakfast)

    Published: Mar 20, 2026 by Tammy Overhoff

    Jump to Recipe

    If you need a quick, high-protein breakfast that you can grab on your way out the door, these sausage egg muffins with cheese are exactly what you’re looking for.

    These egg cheese and sausage muffins come together in about 25 minutes and are perfect for meal prep. Whether you’re heading to work, getting the kids to school, or just trying to avoid skipping breakfast altogether, having something ready to grab makes all the difference.

    They’re low carb, freezer-friendly, and packed with protein, making them a simple, healthy alternative to drive-thru breakfast options. Make a batch for the week or double it and freeze extras so breakfast is always ready when you need it.

    closeup of sausage egg muffins on a plate.

    Quick Look at the Recipe

    • Prep Time: 5 minutes
    • Cook Time: 20–23 minutes
    • Total Time: 25–28 minutes
    • Yield: 12 egg muffins
    • Best For: Meal prep breakfasts, high-protein snacks, low-carb grab-and-go mornings

    High-Protein Sausage Egg Breakfast Muffins For Grab-and-Go Mornings!

    tammy overhoff

    Let’s be honest – mornings don’t always look like a peaceful breakfast at the kitchen table.

    Most days, it’s a mix of getting ready, getting the kids out the door, and trying to remember everything we need before rushing out. And if I don’t have something ready to go, it’s way too easy to skip breakfast or end up grabbing something less-than-ideal on the way.

    That’s why I always make sure to have a few grab-and-go breakfasts prepped and ready. Things like freezer breakfast sandwiches, sausage egg breakfast burritos, easy overnight oats, and smoothie kits are always in rotation – but these sausage egg muffins are one of the easiest options to keep stocked.

    What I love most about this recipe is how simple it is. You can make a batch in about 25 minutes, store them in the fridge for the week, or freeze extras so you always have something ready.

    They’re also super customizable. Some weeks I keep them classic with sausage, egg, and cheese, and other times I’ll switch up the meat, add veggies, or use whatever I have in the fridge.

    And honestly, they just make mornings easier. Instead of overthinking breakfast, I can grab one (or two), warm it up, and move on with my day knowing I’ve had something filling and high in protein.

    Enjoy!

    Ingredients

    ​Here are the ingredients to make these delicious breakfast egg muffins! The full instructions are in the recipe card below.

    ingredients for sausage egg and cheese muffins
    • Raw chicken (or poultry) Italian sausage links casings removed. You can use any sausage in these egg cups, but I love the flavor of Italian sausage, and chicken Italian sausage keeps it low fat. Of course, traditional breakfast sausage; turkey sausage, or pork sausage will work. Or try this delicious homemade breakfast sausage recipe.
    • Olive oil. You can use any oil for cooking the sausage; I like heart-healthy olive oil.
    • Eggs. I use large whole eggs.
    • Milk. Any milk is fine; I like using 2%, half and half, or heavy cream to make the eggs creamy and delicious. You can also use unsweetened coconut or almond milk.
    • Shredded sharp cheddar cheese. You can use packaged shredded cheese, but if you can, shred it fresh. I love the flavor of sharp cheddar, but any cheese will work.
    • Seasoning. Garlic powder, onion powder, salt, and pepper give the egg sausage cups the perfect amount of seasoning.

    How to Make Sausage Egg Muffins (Step-by-Step)

    • Step 1: Preheat the oven to 350°F and spray a 12-cup muffin pan with cooking spray (or use silicone liners).
    • Step 2: In a skillet over medium-high heat, cook the sausage until no longer pink, breaking it into small crumbles as it cooks.
    chicken sausage links in a pan with oil.
    chicken sausage cooked and crumbled in a pan.
    • Step 3: Divide the cooked sausage evenly between the muffin cups.
    • Step 4: In a large bowl, whisk together the eggs, milk, garlic powder, onion powder, salt, and pepper until well combined.
    • Step 5: Pour the egg mixture evenly into each muffin cup, filling about ¾ full.
    egg mixture in a glass bowl.
    pouring egg mixture into the muffin pan cups over the sausage.
    • Step 6: Sprinkle cheese evenly over the top.
    • Step 7: Bake for 20–23 minutes, or until the eggs are just set in the center.
    egg mixture in the muffin pans. Cheddar cheese is sprinkled on top of the egg cups.
    sausage egg cups cooked in a silicone pan.

    Step 8: Let cool slightly, then remove from the pan and serve.

    egg sausage cups stacked on a plate.

    Serving suggestions

    These breakfast egg muffins with sausage are delicious on their own, especially if you’re keeping things low carb.

    You can also:

    • serve them inside an English muffin for a quick breakfast sandwich
    • pair them with a fruit salad, yogurt parfaits, or roasted potatoes for a weekend brunch
    sausage egg cups with a bite out of one stacked on a plate.

    Variations

    Once you’ve made these once, there are so many ways to switch things up.

    • Swap the sausage for Canadian bacon, ham, turkey sausage, or bacon, or leave the meat out completely for a vegetarian version.
    • Add cooked vegetables like spinach, peppers, mushrooms, onions, broccoli, or asparagus. Just be sure to cook them first so the eggs don’t become watery.
    • Change the flavor with different seasonings like taco seasoning, Italian seasoning, or ranch seasoning, or add red pepper flakes for a little heat.
    • Switch up the cheese – feta, mozzarella, Swiss, or pepper jack all work well.
    • For a lighter option, use some egg whites in place of whole eggs, or an egg substitute.
    • You can also turn these into mini breakfast sandwiches by placing them inside English muffins, bagels, or sandwich thins.

    Cooking Tips

    These are simple, but a few small tips will make sure your egg muffins turn out perfect every time.

    • Use cooking spray or silicone liners. I usually use cooking spray because the muffins come out easily, but silicone liners work great too. Avoid paper liners—they tend to stick.
    • Don’t overcook the eggs. Cook just until the eggs are set in the center. Overcooking will make them dry and rubbery, especially after reheating.
    • Let them cool slightly before removing. This helps them hold their shape and makes removal easier.
    • Run a knife around the edges if needed. If any stick, a quick swipe around the edge will loosen them.
    • Cook and drain the sausage well. Removing excess grease helps keep the texture balanced.
    • Make a double batch. If you’re already making these, it’s just as easy to double the recipe and freeze extras for later.
    overhead picture of sausage egg cups.

    Storage Tips

    You can make these sausage egg muffins ahead of time for the week or freezer to have available for a quick breakfast later on. Completely cool them before storing them in the fridge or freezer.

    For the week: After the egg muffins cool, place them into an airtight container and store them for one week in the fridge. Here is a list of my favorite glass meal prep containers. Reheat in the microwave until hot. 

    For the freezer: After the egg muffins cool, wrap place in a freezer bag and make sure all the air is out. Freeze flat until the egg cups are frozen, and then place the freezer bag wherever you want. This keeps the eggs from sticking together as they freeze. Alternatively, you can wrap it in plastic wrap before putting it into the freezer bag.

    To thaw: Take the frozen egg cup out of the freezer and place it into the refrigerator to thaw overnight. Remove the plastic wrap and reheat it in the microwave until hot.

    More Meal Prep Breakfast Recipes

    • Vegetarian Egg Bake
    • Vegetarian Breakfast Burrito
    • Broccoli Egg Bake
    • Steel Cut Oats
    • Banana Baked Oatmeal
    • Cottage Cheese Overnight Oats

    Or check out this list of healthy breakfast freezer meals.

    sausage egg muffins on a plate.

    Egg Cheese Sausage Muffins

    If you need a quick, high-protein breakfast that you can grab on your way out the door, these sausage egg muffins with cheese are exactly what you’re looking for.
    These egg cheese and sausage muffins come together in about 25 minutes and are perfect for meal prep. Whether you’re heading to work, getting the kids to school, or just trying to avoid skipping breakfast altogether, having something ready to grab makes all the difference.
    They’re low carb, freezer-friendly, and packed with protein, making them a simple, healthy alternative to drive-thru breakfast options. Make a batch for the week or double it and freeze extras so breakfast is always ready when you need it.
    5 from 16 votes
    Print Pin Rate
    Course: Breakfast
    Cuisine: American
    Keyword: egg cheese and sausage muffins, egg sausage cheese muffins, Sausage Egg Breakfast Cups, sausage egg cheese muffins
    Prep Time: 10 minutes minutes
    Cook Time: 23 minutes minutes
    Total Time: 33 minutes minutes
    Servings: 12 people
    Calories: 157kcal
    Author: Tammy Overhoff

    Equipment

    • 12-cup muffin pan

    Ingredients

    • Cooking spray
    • 1 tablespoon olive oil
    • 1 pound raw chicken (or poultry) Italian sausage links casings removed
    • 12 eggs
    • ¼ cup milk or any milk of choice.
    • ½ cup shredded cheddar cheese
    • 1 teaspoon garlic powder
    • 1 teaspoon onion powder
    • 1/2 teaspoon salt
    • 1/2 teaspoon ground black pepper

    Instructions

    • Start by preheating the oven to 350 degrees.
    • Spray a 12-cup muffin pan with cooking spray or line it with silicone or parchment liners and set aside.
    • Over medium-high heat, cook the sausages in a large skillet until no longer pink. As they cook, break the sausage up, with a spatula, into small pieces.
    • If needed, drain slightly, and then divide sausage crumbles among the 12 muffin cups.
    • In a large bowl, whisk together eggs, milk, garlic powder, onion powder, salt, and pepper until all ingredients are combined.
    • Pour the egg mixture evenly over the chicken sausage. Lightly stir the sausage and eggs together. 
    • Sprinkle cheese evenly over muffin cups.
    • Cook for 20 – 23 minutes or until the eggs are set. Serve hot.

    Notes

    **To remove the eggs from the muffin pan, glide a butter knife around the edges and then carefully lift the egg cup from the pan.
    Storage Tips
    You can make these sausage egg muffins ahead of time for the week or freezer to have available for a quick breakfast later on. Completely cool them before storing them in the fridge or freezer.
    For the week: After the egg muffins cool, place them into an airtight container and store them for one week in the fridge. Here is a list of my favorite glass meal prep containers. Reheat in the microwave until hot. 
    For the freezer: After the egg muffins cool, wrap place in a freezer bag and make sure all the air is out. Freeze flat until the egg cups are frozen, and then place the freezer bag wherever you want. This keeps the eggs from sticking together as they freeze. Alternatively, you can wrap it in plastic wrap before putting it into the freezer bag.
    To thaw: Take the frozen egg cup out of the freezer and place it into the refrigerator to thaw overnight. Remove the plastic wrap and reheat it in the microwave until hot.

    Nutrition

    Serving: 1g | Calories: 157kcal | Carbohydrates: 3g | Protein: 13g | Fat: 10g | Saturated Fat: 4g | Polyunsaturated Fat: 2g | Monounsaturated Fat: 4g | Trans Fat: 0.02g | Cholesterol: 189mg | Sodium: 543mg | Potassium: 152mg | Fiber: 0.4g | Sugar: 2g | Vitamin A: 348IU | Vitamin C: 12mg | Calcium: 73mg | Iron: 4mg

    Did you make this recipe?

    Have you tried this Egg Cheese Sausage Muffins recipe yet? If so, I’d love for you to rate this recipe and leave a comment below. We all learn from each other’s experiences.

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    About Tammy Overhoff

    Hi, I’m Tammy Overhoff, a busy mom, wife, and entrepreneur. I am the owner, author, and recipe developer here at Organize Yourself Skinny. Since 2011 Organize Yourself Skinny has become a trusted resource for clean eating recipes to meal prep, reviews, and lifestyle hacks to help you fit healthy habits and routines into your busy schedule. Check out my online shop Reset & Flourish for all of my eBooks, Guides, and Bundles!

    Reader Interactions

    Comments

    1. Wendy says

      December 22, 2024 at 11:25 am

      5 stars
      I used a bit more onion and garlic power, increased the salt by 1/8 tsp and the pepper by 1/2 tsp. I also added a small pinch of Aleppo pepper. When I bought the turkey sausage, I failed to read the pre-cooked text. It was a painful thing to get the skin off but I figured out that if I cut the sausage into 1/2″ to 1″ chunks, it was easier to peel it off. They turned out fabulous. There is a nice kick to them. Thanks for a really good recipe.

      Reply
    2. Patti says

      September 23, 2016 at 10:36 pm

      5 stars
      I use parchment paper muffin liners.

      Reply
    3. Sarah Brookner says

      November 02, 2014 at 9:36 pm

      5 stars
      Made these tonight. They are very easy, very yummy and popped right out of the muffin cups.

      Reply
    4. Rosie says

      July 23, 2014 at 5:45 am

      5 stars
      Hi,

      I haven’t had much experience with freezing eggs for the reason you stated. But I have been wanting to try it, I have read tips from other blogs that state if you allow them to cool completely before freezing it eliminates that problem.

      Reply
    5. Raquel says

      July 22, 2014 at 2:33 pm

      5 stars
      Just tried making these (first time for any type of freezer cooking). I used small chunks of ham instead of sausage, they turned out ok. I did learn one thing though; do NOT use muffin wrappers to cook the eggs in; they ‘stick’ (I only did that with 6 as i have one older muffin tin and no spray). Thanks for this, easy to do and not much time to do it!

      Reply
    6. Bernie s. says

      January 30, 2014 at 2:14 pm

      5 stars
      I used turkey crumbles laughing cow chipotle wedges and ff half and half they came out great only made six used 3wedges cheese cut in half half cup of crumbles 4tbs ff creamer came out great just have to figure calories

      Reply
    7. Lori says

      January 30, 2014 at 7:08 am

      5 stars
      I also did these with egg white substitute and they were great helps with the ww pts

      Reply
    8. Sally says

      January 30, 2014 at 12:22 am

      5 stars
      I always make these but I line the cupcake mould with toast slices. They r delicious a great hit at our house

      Reply
    9. grannisue says

      January 29, 2014 at 11:33 pm

      5 stars
      If you’re doing WW it’s 3 pts. per cup. You can have how many you want. I would stick with one and have it on an English muffin.

      Reply
    10. Ann says

      January 29, 2014 at 11:05 pm

      5 stars
      Will this recipe work the same without sausage? We are a vegetarian household but my son loves eggs.

      Reply
      • Barbara Keding says

        January 31, 2014 at 8:17 am

        5 stars
        You could swap out the sausage with a variety of chopped veggies, like zucchini squash, peppers, mushrooms, etc. Whatever suits your fancy. 🙂 I make em like that sometimes. Very tasty. My kids LOVE em.

        Reply
    11. Sarah Olson says

      January 29, 2014 at 10:51 pm

      How do you think these would be without the cheese? My son cannot have dairy so I would have to substitute coconut or soy milk and skip the cheese….what do you think?

      Reply
      • Rosie says

        July 23, 2014 at 5:42 am

        5 stars
        I make these all the time, although I never thought to freeze them. I like broccoli and cheese myself. Although sometimes I use bacon or mushrooms. Basically anything you enjoy in an omelette is a great addition in these. So if you don’t add cheese and your son enjoys them its a win.

        Reply
    12. Linda Archer says

      January 28, 2014 at 1:46 pm

      5 stars
      This was a huge success at our house! My boys normally eat cereal for breakfast and my husband eats nothing at all. All 4 (hubby, 13yo, 10yo, 8yo). liked these – which almost never happens. They were gone so fast nothing was left to freeze :). My 13yo is also an athlete and these make the perfect protein filled snack pre or post workout. Thanks!!

      Reply
    13. JDaniel4's Mom says

      September 11, 2012 at 8:10 am

      5 stars
      These really make me want them for breakfast. The look delicious.

      Reply
    14. Donna Howard says

      September 10, 2012 at 9:13 am

      5 stars
      thank you! It was probably obvious to ‘smart’ cooks – of which I ain’t!!! ha ha. I am making these for my hubby since he is low carbing it, to take to work as lunch. He’ll love them!! Thanks again Tammy – even without kids at home, I appreciate all your recipes!! (Especially the low carb kind!)

      Reply
      • patrice says

        July 22, 2014 at 7:04 pm

        5 stars
        350° according to the recipe.

        Reply

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    Hi, I’m Tammy Overhoff, a busy mom, wife, and entrepreneur. I am the owner, author, and recipe developer here at Organize Yourself Skinny. Since 2011 Organize Yourself Skinny has become a trusted resource for clean eating meal prep recipes, reviews, and lifestyle hacks to help you fit healthy habits and routines into your busy schedule. Check out my online shop Reset & Flourish for all of my eBooks, Guides, and Bundles!

    More about me →

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